citHeader("Please cite the first paper for the software itself and the other papers for the various original statistical methods implemented in edgeR.  See Section 1.2 in the User's Guide for more detail.")

citEntry(
   entry="article",
   title = "edgeR: a Bioconductor package for differential expression analysis of digital gene expression data",
   author = "Mark D Robinson and Davis J McCarthy and Gordon K Smyth",
   journal = "Bioinformatics",
   volume = 26,
   pages = 139-140,
   year = 2010,
   textVersion = "Robinson MD, McCarthy DJ and Smyth GK (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140"
)

citEntry(
	entry="article",
	author = "McCarthy, Davis J. and Chen, Yunshun and Smyth, Gordon K.", 
	title = "Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation", 
	year = 2012,
	journal = "Nucleic Acids Research",
	volume = 40,
	number = 10,
	pages = 4288-4297,
	textVersion = "McCarthy DJ, Chen Y and Smyth GK (2012). Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Research 40, 4288-4297"
)

citEntry(
   entry="article",
   title = "Moderated statistical tests for assessing differences in tag abundance",
   author = "Mark D Robinson and Gordon K Smyth",
   journal = "Bioinformatics",
   volume = 23,
   pages = 2881-2887,
   year = 2007,
	textVersion = "Robinson MD and Smyth GK (2007). Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 23, 2881-2887"
)

citEntry(
   entry="article",
   title = "Small-sample estimation of negative binomial dispersion, with applications to SAGE data",
   author = "Mark D Robinson and Gordon K Smyth",
   journal = "Biostatistics",
   volume = 9,
   pages = 321-332,
   year = 2008,
   textVersion = "Robinson MD and Smyth GK (2008). Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics, 9, 321-332"
)


citEntry(
   entry="article",
   title = "Robustly detecting differential expression in RNA sequencing data using observation weights",
   author = "Xiaobei Zhou and Helen Lindsay and Mark D Robinson",
   journal = "Nucleic Acids Research",
   volume = 42,
   pages = "e91",
   year = 2014,
   textVersion = "Zhou X, Lindsay H, Robinson MD (2014). Robustly detecting differential expression in RNA sequencing data using observation weights. Nucleic Acids Research, 42(11), e91."
)

